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Muscle project

...some intro/description ..

General scheme of the project

Experiments Rat ..experiment description .. Human ..experiment description ..

Bioinformatic analysis Human data analysis Differentially expressed genes Ontology analysis CAGE-seq analysis GTRD database TSS and DEGs Key master regulators of co-expressed genes Gene set enrichment analysis (GSEA) Unique intergenic TSS Alternative usage of dominating TSS Enhancers Merging CAGE experiments Methods References

Mathematical modelling Linkage of metabolic pathways and gene expression MetGeneConjugation Pathways and key proteins AMPK Ca-CaM-AMPK signaling models CaMKII CaMKKβ LKB1 Models Muscle models DataSets Integrated modular models ... Model validation Publications of the project GTRD: a database on gene transcription regulation A Modular Visual Model of Energy Metabolism in Human Skeletal Muscle A Modular Visual Model of Energy Metabolism in Human Skeletal Muscle